getRangeValues: Gets the values of genomic ranges

In uzh/ezRun: An R meta-package for the analysis of Next Generation Sequencing Data

Gets the values of genomic ranges

Description

Gets the values of genomic ranges

Usage

getRangeValues(
  cov,
  targetRanges,
  doRev = as.character(strand(targetRanges)) == "-",
  asMatrix = TRUE
)

Arguments

cov	an object of the class RleList.
targetRanges	an object of the class GRanges.
doRev	a logical vector indicating whether to reverse ranges. Usually derived from targetRanges.
asMatrix	a logical indicating whether to return the values as a matrix.

Value

Returns the values or a matrix containing them.

Author(s)

Rehrauer, Hubert

Schmid, Peter

See Also

RleViewsList

viewApply

uzh/ezRun documentation built on Sept. 16, 2024, 11:21 p.m.