runTEQC: Runs the target enrichment quality control
In uzh/ezRun: An R meta-package for the analysis of Next Generation Sequencing Data
View source: R/app-targetEnrichmentQC.R
runTEQC R Documentation
Runs the target enrichment quality control
Description
Performs a target enrichment quality control and creates reports of the outcome.
Usage
runTEQC(file, allExons, param)
Arguments
file
a character representing the path to the file containing the reads.
param
a list of parameters:
designFile a file describing the regions selected by the enrichment kit.
covUniformityPlot a logical indicating whether to generate plots for coverage uniformity.
covTargetLengthPlot a logical indicating whether to generate plots for coverage vs. target length.
duplicatesPlot a logical indicating whether to generate plots for duplicates.
paired a logical indicating whether the samples are paired.
Author(s)
Rehrauer, Hubert
Schmid, Peter
uzh/ezRun documentation built on Dec. 26, 2024, 9:53 a.m.
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View source: R/app-targetEnrichmentQC.R
| runTEQC | R Documentation |
Runs the target enrichment quality control
Description
Performs a target enrichment quality control and creates reports of the outcome.
Usage
runTEQC(file, allExons, param)
Arguments
file |
a character representing the path to the file containing the reads. |
param |
a list of parameters:
|
Author(s)
Rehrauer, Hubert
Schmid, Peter
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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