CheA3_TF_nTargets: A data.frame with the number of targets of each TF in ChEA3

In vallotlab/ChromSCape: Analysis of single-cell epigenomics datasets with a Shiny App

A data.frame with the number of targets of each TF in ChEA3

Description

This data.frame was obtained by downloading datasets from ChEA3 database (https://maayanlab.cloud/chea3/) and merging targets for :

• ARCHS4_Coexpression

• ENCODE_ChIP-seq

• Enrichr_Queries

• GTEx_Coexpression

• Literature_ChIP-seq

• ReMap_ChIP-seq

Usage

data("CheA3_TF_nTargets")

Format

CheA3_TF_nTargets - a data.frame with 1632 rows (unique TFs) and 2 columns

References

Keenan AB, Torre D, Lachmann A, Leong AK, Wojciechowicz M, Utti V, Jagodnik K, Kropiwnicki E, Wang Z, Ma'ayan A (2019) ChEA3: transcription factor enrichment analysis by orthogonal omics integration. Nucleic Acids Research. doi: 10.1093/nar/gkz446

The data.frame is composed of two columns:

• TF column containing the TF gene names (human)

• nTargets_TF containing the number of targets for this TF in the combined database.

Examples

data("CheA3_TF_nTargets")
head(CheA3_TF_nTargets)

vallotlab/ChromSCape documentation built on Oct. 15, 2023, 1:47 p.m.