annotToCol2: annotToCol2

In vallotlab/ChromSCape: Analysis of single-cell epigenomics datasets with a Shiny App

annotToCol2

Description

annotToCol2

Usage

annotToCol2(
  annotS = NULL,
  annotT = NULL,
  missing = c("", NA),
  anotype = NULL,
  maxnumcateg = 2,
  categCol = NULL,
  quantitCol = NULL,
  plotLegend = TRUE,
  plotLegendFile = NULL
)

Arguments

annotS	A color matrix
annotT	A color matrix
missing	Convert missing to NA
anotype	Annotation type
maxnumcateg	Maximum number of categories
categCol	Categorical columns
quantitCol	Quantitative columns
plotLegend	Plot legend ?
plotLegendFile	Which file to plot legend ?

Value

A matrix of continuous or discrete colors

Examples

data("scExp")
annotToCol2(SingleCellExperiment::colData(scExp), plotLegend = FALSE)

vallotlab/ChromSCape documentation built on Oct. 15, 2023, 1:47 p.m.