choose_perplexity: Choose perplexity depending on number of cells for Tsne
In vallotlab/ChromSCape: Analysis of single-cell epigenomics datasets with a Shiny App
View source: R/preprocessing_filtering_reduction.R
choose_perplexity R Documentation
Choose perplexity depending on number of cells for Tsne
Description
Choose perplexity depending on number of cells for Tsne
Usage
choose_perplexity(dataset)
Arguments
dataset
A matrix of features x cells (rows x columns)
Value
A number between 5 and 30 to use in Rtsne function
vallotlab/ChromSCape documentation built on Oct. 15, 2023, 1:47 p.m.
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View source: R/preprocessing_filtering_reduction.R
| choose_perplexity | R Documentation |
Choose perplexity depending on number of cells for Tsne
Description
Choose perplexity depending on number of cells for Tsne
Usage
choose_perplexity(dataset)
Arguments
dataset |
A matrix of features x cells (rows x columns) |
Value
A number between 5 and 30 to use in Rtsne function
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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