concatenate_scBed_into_clusters: Concatenate single-cell BED into clusters

In vallotlab/ChromSCape: Analysis of single-cell epigenomics datasets with a Shiny App

Concatenate single-cell BED into clusters

Description

Concatenate single-cell BED into clusters

Usage

concatenate_scBed_into_clusters(affectation, files_list, odir)

Arguments

affectation	Annotation data.frame containing cluster information
files_list	Named list of scBED file paths to concatenate. List Names must match affectation$sample_id and basenames must match affectation$barcode.
odir	Output directory to write concatenate pseudo-bulk BEDs.

Value

Merge single-cell BED files into cluster BED files. Ungzip file if BED is gzipped.

vallotlab/ChromSCape documentation built on Oct. 15, 2023, 1:47 p.m.