annotation_from_merged_peaks: Find nearest peaks of each gene and return refined annotation
In vallotlab/ChromSCape: Analysis of single-cell epigenomics datasets with a Shiny App
annotation_from_merged_peaks R Documentation
Find nearest peaks of each gene and return refined annotation
Description
Find nearest peaks of each gene and return refined annotation
Usage
annotation_from_merged_peaks(scExp, odir, merged_peaks, geneTSS_annotation)
Arguments
scExp
A SingleCellExperiment object
odir
An output directory where to write the mergedpeaks BED file
merged_peaks
A list of GRanges object containing the merged peaks
geneTSS_annotation
A GRanges object with reference genes
Value
A data.frame with refined annotation
vallotlab/ChromSCape documentation built on Oct. 15, 2023, 1:47 p.m.
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| annotation_from_merged_peaks | R Documentation |
Find nearest peaks of each gene and return refined annotation
Description
Find nearest peaks of each gene and return refined annotation
Usage
annotation_from_merged_peaks(scExp, odir, merged_peaks, geneTSS_annotation)
Arguments
scExp |
A SingleCellExperiment object |
odir |
An output directory where to write the mergedpeaks BED file |
merged_peaks |
A list of GRanges object containing the merged peaks |
geneTSS_annotation |
A GRanges object with reference genes |
Value
A data.frame with refined annotation
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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