filter_genes_with_refined_peak_annotation: Filter genes based on peak calling refined annotation

In vallotlab/ChromSCape: Analysis of single-cell epigenomics datasets with a Shiny App

Filter genes based on peak calling refined annotation

Description

Filter genes based on peak calling refined annotation

Usage

filter_genes_with_refined_peak_annotation(
  refined_annotation,
  peak_distance,
  signific,
  over,
  under
)

Arguments

refined_annotation	A data.frame containing each gene distance to real peak
peak_distance	Minimum distance to an existing peak to accept a given gene
signific	Indexes of all significantly differential genes
over	Indexes of all significantly overexpressed genes
under	Indexes of all significantly underexpressed genes

Value

List of significantly differential, overexpressed and underexpressed genes close enough to existing peaks

vallotlab/ChromSCape documentation built on Oct. 15, 2023, 1:47 p.m.