pr2_read: Reads the whole PR2 database into a data frame
In vaulot/dvutils: A set of utilities
Description
Usage
Arguments
Value
Examples
View source: R/pr2_management.R
Description
The database access codes is obtained with the function db_info("pr2_google").
Important: This gets the whole database, including sequences that have been removed. These sequences must be filtered out before export using pr2 <- pr2 %>% filter (is.na(removed_version)). However the taxo entries that have been removed are already removed.
Usage
1
pr2_read(taxo_levels_number = 8)
Arguments
taxo_levels_number
integer - number of taxonomic levels, 8 or 9
Value
A data frame with all the columns from pr2.
Examples
1
pr2 <- pr2_read(taxo_levels_number = 8)
vaulot/dvutils documentation built on Nov. 20, 2021, 11:01 a.m.
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Description Usage Arguments Value Examples
View source: R/pr2_management.R
Description
The database access codes is obtained with the function db_info("pr2_google").
Important: This gets the whole database, including sequences that have been removed. These sequences must be filtered out before export using pr2 <- pr2 %>% filter (is.na(removed_version)). However the taxo entries that have been removed are already removed.
Usage
1 | pr2_read(taxo_levels_number = 8)
|
Arguments
taxo_levels_number |
integer - number of taxonomic levels, 8 or 9 |
Value
A data frame with all the columns from pr2.
Examples
1 | pr2 <- pr2_read(taxo_levels_number = 8)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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