pr2_taxo_X: Add _X for taxon that are repeated on same line

In vaulot/dvutils: A set of utilities

Description

If more than 2 ranks on a given line have the same name or is empty, rename with Mytaxon_X, Mytaxon_XX etc.. up to the species name which becomes Mytaxon_XX_sp.

Usage

pr2_taxo_X(pr2_taxo, taxo_levels = pr2.env$taxo_levels[[8]])

Arguments

pr2_taxo	Data frame containing columns from kingdom to species (or else see the next parameter). It is not necessary that the columns be ordered.
taxo_levels	A vector of ordered taxonomic ranks such as c("kingdom", "supergroup", "division", "class", "order", "family", "genus", "species")

Value

A corrected data frame

Examples

pr2_taxo_clean <- pr2_taxo_X(pr2_taxo, pr2.env$taxo_levels)

vaulot/dvutils documentation built on Nov. 20, 2021, 11:01 a.m.