API for vittoriofortino84/COPS
Clustering algorithms for Omics-driven Patient Stratification
| Global functions | |
|---|---|
| COPS | Man page Source code |
| DSC | Man page Source code |
| DiffRank | Man page Source code |
| ECMC | Man page Source code |
| KEGG_networks | Man page Source code |
| PIK | Man page Source code |
| PIK_GNGS | Man page Source code |
| PIK_KEGG | Man page Source code |
| PIK_from_networks | Man page Source code |
| RWRFGSEA | Man page Source code |
| ad_ge_micro_zscore | Man page |
| ad_studies | Man page |
| binary_node_attribute_smoothing_from_adjacency | Source code |
| bootstrap | Man page Source code |
| brca_multi_omics | Man page |
| cbind_fill | Man page Source code |
| center_kernel | Man page Source code |
| check_dims | Source code |
| close_parallel_cluster | Source code |
| cluster_associations | Man page Source code |
| clustering_analysis | Man page Source code |
| clustering_dissimilarity_from_data | Man page Source code |
| clustering_metrics | Man page Source code |
| clusteval_scoring | Man page Source code |
| coexpression_network_unweighted | Man page Source code |
| cv_fold | Man page Source code |
| data_preprocess | Man page Source code |
| dimensionality_reduction | Man page Source code |
| ecdf_transform | Man page Source code |
| ecmc_opt | Source code |
| embarrassingly_parallel_pipeline | Source code |
| expressionToRWFeatures | Man page Source code |
| feature_associations | Man page Source code |
| fgsea_wrapper | Man page Source code |
| format_scores | Man page Source code |
| gene_module_eigengenes | Man page Source code |
| gene_module_score | Man page Source code |
| genes_to_pathways | Man page Source code |
| getHumanPPIfromSTRINGdb | Man page Source code |
| get_best_result | Man page Source code |
| get_kernel_weights | Man page Source code |
| get_metric_comparators | Man page Source code |
| get_multi_omic_kernels | Man page Source code |
| get_reference_fold | Source code |
| global_kernel_kmeans | Man page Source code |
| gsva_wrapper | Source code |
| heatmap_annotated | Man page Source code |
| heatmap_annotations | Man page Source code |
| jaccard_matrix | Man page Source code |
| jaccard_similarity | Man page Source code |
| kernel_kmeans | Man page Source code |
| kernel_kmeans_algorithm | Source code |
| kernel_kmeans_spectral_approximation | Source code |
| kernel_kmeanspp | Source code |
| kernelized_kmeans | Man page Source code |
| knn_communities | Man page Source code |
| knn_g | Man page Source code |
| mkkm_mr | Man page Source code |
| mkkm_mr_h_opt | Source code |
| mkkm_mr_mu_opt | Source code |
| mkkm_mr_mu_opt_cvxr | Source code |
| mkkm_mr_mu_opt_mosek | Source code |
| mkkm_mr_objective | Source code |
| multi_omic_clustering | Man page Source code |
| multi_view_subsampling | Source code |
| no_spam_wrapper | Source code |
| node_betweenness_first_path_only | Source code |
| node_betweenness_parallel | Man page Source code |
| node_betweenness_with_endpoint | Source code |
| normalize_kernel | Man page Source code |
| outer_join_by_closure | Source code |
| pareto_fronts | Man page Source code |
| pareto_plot | Man page Source code |
| pathway_gene_subnetworks | Man page Source code |
| pathway_networks | Man page |
| pca_viz | Man page Source code |
| plot_pvalues | Man page Source code |
| plot_similarity_matrix | Man page Source code |
| print_flush | Source code |
| process_kernel | Source code |
| psoriasis_clinical_example | Man page |
| psoriasis_degs_example | Man page |
| psoriasis_example_MEs | Man page |
| psoriasis_rnaseq_corrected | Man page |
| psoriasis_rnaseq_example | Man page |
| psoriasis_rnaseq_normalized | Man page |
| rbind_fill | Man page Source code |
| reorder_method_factors | Man page Source code |
| retrieveDiseaseGenesOT | Man page Source code |
| rwr_wrapper | Man page Source code |
| scale_kernel_norm | Man page Source code |
| scoring | Man page Source code |
| seeded_rwr | Man page Source code |
| setup_parallelization | Source code |
| silhouette_adjusted | Source code |
| split_by_safe | Source code |
| stability_evaluation | Man page Source code |
| stability_evaluation_pac | Man page Source code |
| subsample_association_analysis | Man page Source code |
| subsample_clustering_evaluation | Man page Source code |
| subsample_dimred | Man page Source code |
| subsample_module_evaluation | Man page Source code |
| subsample_pathway_enrichment | Man page Source code |
| subsample_survival_evaluation | Man page Source code |
| subsampling | Man page Source code |
| subset_data | Source code |
| survival_preprocess | Man page Source code |
| time_taken_string | Source code |
| triple_viz | Man page Source code |
| tsne_viz | Man page Source code |
| umap_viz | Man page Source code |
| univariate_features | Man page Source code |
| unsigned_TOM_matrix | Man page Source code |
| vertical_pipeline | Man page Source code |
| weighted_linear_kernel | Man page Source code |
