vivekbhr/icetea: Integrating Cap Enrichment with Transcript Expression Analysis
icetea (Integrating Cap Enrichment with Transcript Expression Analysis) provides functions for end-to-end analysis of multiple 5'-profiling methods such as CAGE, RAMPAGE and MAPCap, beginning from raw reads to detection of transcription start sites using replicates. It also allows performing differential TSS detection between group of samples, therefore, integrating the mRNA cap enrichment information with transcript expression analysis.
Getting started
Browse package contents
Package details |
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| Bioconductor views | DifferentialExpression GeneExpression ImmunoOncology RNASeq Sequencing Transcription Transcriptomics |
| Maintainer | |
| License | GPL-3 + file LICENSE |
| Version | 1.7.0 |
| URL | https://github.com/vivekbhr/icetea |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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