getOnto: get the ontology based on a short tag and year
In vjcitn/ontoProc: processing of ontologies of anatomy, cell lines, and so on
getOnto R Documentation
get the ontology based on a short tag and year
Description
get the ontology based on a short tag and year
Usage
getOnto(ontoname = "cellOnto", year_added = "2023")
Arguments
ontoname
character(1) must be an element in 'valid_ontonames()'
year_added
character(1) refers to 'rdatadateadded' in AnnotationHub metadata
Note
This queries AnnotationHub for "ontoProcData" and then filters to find
the AnnotationHub accession number and retrieves the ontologyIndex serialization
of the associated OBO representation of the ontology.
Examples
co = getOnto()
tail(co$name[1000:1500])
vjcitn/ontoProc documentation built on Nov. 27, 2024, 4:38 p.m.
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| getOnto | R Documentation |
get the ontology based on a short tag and year
Description
get the ontology based on a short tag and year
Usage
getOnto(ontoname = "cellOnto", year_added = "2023")
Arguments
ontoname |
character(1) must be an element in 'valid_ontonames()' |
year_added |
character(1) refers to 'rdatadateadded' in AnnotationHub metadata |
Note
This queries AnnotationHub for "ontoProcData" and then filters to find the AnnotationHub accession number and retrieves the ontologyIndex serialization of the associated OBO representation of the ontology.
Examples
co = getOnto()
tail(co$name[1000:1500])
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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