mapOneNaive: use grep or agrep to find a match for a naive token into...

In vjcitn/ontoProc: processing of ontologies of anatomy, cell lines, and so on

use grep or agrep to find a match for a naive token into ontology

Description

use grep or agrep to find a match for a naive token into ontology

Usage

mapOneNaive(naive, onto, useAgrep = FALSE, ...)

Arguments

naive	character(1)
onto	an instance of ontologyIndex::ontology_index
useAgrep	logical(1) if TRUE, agrep will be used
...	passed to agrep if used

Value

if a match is found, the result of grep/agrep with value=TRUE is returned; otherwise a named NA_character_ is returned

named vector, names are ontology identifiers, values are matched strings

Examples

#co = ontoProc::getCellOnto()
co = getOnto("cellOnto", year_added="2023")
mapOneNaive("astrocyte", co)

vjcitn/ontoProc documentation built on Aug. 3, 2024, 12:48 p.m.