jowl2classgraph_nio: extract class relationship graph from JSON representation of...
In vjcitn/ontoProc: processing of ontologies of anatomy, cell lines, and so on

jowl2classgraph_nio

R Documentation

extract class relationship graph from JSON representation of OWL for NIO

Description

extract class relationship graph from JSON representation of OWL for NIO

Usage

jowl2classgraph_nio(jsonpath, dropstrings = NULL)

Arguments

`jsonpath`	character(1) path to JSON, typically generated by java robot applied to owl
`dropstrings`	character(), strings to be excised from class names

Value

graphNEL with edgemode 'directed'

Examples

if (!requireNamespace("graph")) stop("install graph package from Bioconductor to use this function")
jpath = system.file("json", "nio.json.gz", package="ontoProc")
cg = jowl2classgraph_nio(jpath,
  dropstrings = "http://purl.org/autism-ontology/1.0/autism-rules.owl#")
head(graph::nodes(cg))

vjcitn/ontoProc documentation built on July 5, 2025, 6:31 a.m.