API for vladpetyuk/vp.misc
Miscellaneous functions used by Vlad Petyuk for proteomics data analysis
| Global functions | |
|---|---|
| blue.colors | Man page Source code |
| colorschemes | Man page |
| concatenate_by_features | Man page Source code |
| correct_batch_effect | Man page Source code |
| correct_batch_effect_empiricalBayesLM | Man page |
| cv_foreach | Source code |
| cv_mclapply | Source code |
| cv_onethread | Source code |
| cv_round | Source code |
| dist | Man page Source code |
| dusk.colors | Man page Source code |
| eset_lm | Man page |
| eset_lm_shuffled | Source code |
| eset_presence_absence | Man page Source code |
| exhaustive_ratios | Man page Source code |
| get_knn | Source code |
| heatmap.3 | Man page Source code |
| heatmap.plus.2 | Man page |
| hot.colors | Man page Source code |
| hot2.colors | Man page Source code |
| image_msnset | Man page Source code |
| image_msnset_old | Source code |
| impute_one | Source code |
| jet.colors | Man page Source code |
| jet2.colors | Man page Source code |
| keep_longest_isoform_per_gene | Man page |
| knn_imputation | Man page Source code |
| limma_a_b | Man page Source code |
| limma_gen | Man page Source code |
| lm_for_one | Source code |
| longitudinal_biomarker_study | Man page |
| lr_cv_round | Source code |
| lr_modeling | Man page Source code |
| lsos | Source code |
| make.unique.2 | Man page Source code |
| map_PTM_sites | Man page Source code |
| mixed_effects_anova | Man page Source code |
| msnset | Man page |
| msnset2txt | Man page Source code |
| normalizeByGlob | Man page Source code |
| normalizeByRef | Man page Source code |
| normalize_by_feature_property | Man page Source code |
| oca.set | Man page |
| plotAUC | Man page Source code |
| plot_annHeatmap2 | Man page |
| plot_diagnostics | Source code |
| plot_feature | Man page Source code |
| plot_pca_v1 | Man page Source code |
| plot_pca_v2 | Man page Source code |
| plot_pca_v3 | Man page Source code |
| plot_pca_v4 | Man page |
| plot_umap | Man page Source code |
| protein_inference | Man page Source code |
| readMaxQuantPeptides | Man page |
| readMaxQuantProtGroups | Man page Source code |
| readMaxQuantSummary | Man page |
| readSkyLinePRR | Man page Source code |
| remove_batch_effect | Man page |
| remove_covariate | Man page Source code |
| rf_modeling | Man page Source code |
| rf_modeling_old | Source code |
| rrollup | Man page Source code |
| rrollup_a_feature_set | Source code |
| select_features_Boruta | Source code |
| select_features_lasso | Source code |
| select_features_top | Source code |
| select_features_varSelRF | Source code |
| subset_by_size | Man page Source code |
| train_model_lr | Source code |
| train_model_rf | Source code |
| volcano_plot | Man page Source code |
| xtable2 | Man page Source code |
