getMDFR.Fisheries.CatchBiomass: Get fishery catch biomass time series from model results from...

In wStockhausen/rTCSAM2013: Functions to run and plot output from TCSAM2013 models.

Description

Function to get fishery catch biomass time series from model results from TCSAM2013 model runs as a dataframe.

Usage

getMDFR.Fisheries.CatchBiomass(obj, category = c("captured", "discarded",
  "retained", "discard mortality", "total mortality", "index"), cast = "y+x",
  fleets = c("TCF", "SCF", "RKF", "GTF"), verbose = FALSE)

Arguments

obj	- single tcsam2013.rep object, tcsam2013.resLst object, or named list of the latter
category	- 'captured','discarded','retained', 'discard mortality', 'total mortality', or 'index'
cast	- casting formula (e.g., "x+m") for excluding x,m,s,z factor levels from a sum across the unspecified factors
fleets	- name(s) of fisheries
verbose	- flag (T/F) to print debug info

Details

Extracts the estimated fishery biomass time series.

Value

dataframe in canonical format

wStockhausen/rTCSAM2013 documentation built on May 3, 2019, 7:13 p.m.