getMDFR.Pop.Quantities: Get predicted population quantities (time series) from...

In wStockhausen/rTCSAM2013: Functions to run and plot output from TCSAM2013 models.

Description

Function to get predicted population quantities (time series) from several model runs.

Usage

getMDFR.Pop.Quantities(obj, type = c("MB_yx", "R_y", "iN_xmsz", "fN_xmsz",
  "B_yxmsz", "B_yxmz", "B_yxms", "B_yxm", "B_yx", "N_yxmsz", "N_yxmz", "N_yxms",
  "N_yxm", "N_yx"), verbose = FALSE)

Arguments

obj	- object that can be converted into a list of tcsam2013.resLst objects
type	- population quantity to retrieve
verbose	- flag (T/F) to print debug info

Details

Potential values for 'type' are:

• 'MB_yx' - mature biomass at spawning time (1000's t)

• 'R_y' - recruitment (millions)

• 'iN_xmsz' - initial (July 1) abundance by x,m,s,z (millions)

• 'fN_xmsz' - final (July 1) abundance by x,m,s,z (millions)

• 'B_yxmsz' - annual (July 1) abundance by x,m,s,z (millions)

• 'B_yxmz' - annual (July 1) abundance by x,m,z (millions)

• 'B_yxz' - annual (July 1) abundance by x,z (millions)

• 'B_yxms' - annual (July 1) abundance by x,m,s (millions)

• 'B_yxm' - annual (July 1) abundance by x,m (millions)

• 'B_yx' - annual (July 1) abundance by x (millions)

• 'N_yxmsz' - annual (July 1) abundance by x,m,s,z (millions)

• 'N_yxmz' - annual (July 1) abundance by x,m,z (millions)

• 'N_yxz' - annual (July 1) abundance by x,z (millions)

• 'N_yxms' - annual (July 1) abundance by x,m,s (millions)

• 'N_yxm' - annual (July 1) abundance by x,m (millions)

• 'N_yx' - annual (July 1) abundance by x (millions)

Uses reshape2::melt and reshape2::dcast.

Value

dataframe

wStockhausen/rTCSAM2013 documentation built on May 3, 2019, 7:13 p.m.