Description Usage Arguments Details Value
Function to get estimated/predicted survey-related quantities from several model runs.
1 2 3 4 5 6 | getMDFR.SurveyQuantities(obj, type = c("MB_yx", "lglN_y", "lglB_y", "N_yxmsz",
"N_yxmz", "N_yxz", "N_yxms", "N_yxm", "N_yx", "B_yxmsz", "B_yxmz", "B_yxz",
"B_yxms", "B_yxm", "B_yx", "prNatZ_yxmsz", "prNatZ_yxmz", "prNatZ_yxz",
"PRs_yxmsz", "PRs_yxmz", "PRs_yxz", "mnPrNatZ_xmz", "mnPrNatZ_xz", "qSrv_xy",
"selSrv_cxz", "selSrv_yxz", "zscores", "effSS_y"), pdfType = c("lognormal",
"normal"), ci = 0.8, verbose = FALSE)
|
obj |
- object that can be converted into a list of tcsam2013.resLst objects |
type |
- survey-related quantity to retrieve |
pdfType |
- type of error distribution for observations |
ci |
- confidence interval for error bars on observations |
verbose |
- flag (T/F) to print debug info |
Potential values for 'type' are:
'MB_yx' - mature biomass at survey time, by sex (1000's t)
'B_yx' - total biomass at survey time, by sex (1000's t)
'N_yxmsz' - annual survey abundance-at-size by x,m,s (millions)
'N_yxmz' - annual survey abundance-at-size by x,m (millions)
'N_yxz' - annual survey abundance-at-size by x (millions)
'N_yxms' - annual survey abundance by x,m,s (millions)
'N_yxm' - annual survey abundance by x,m (millions)
'N_yx' - annual survey abundance by x (millions)
'B_yxmsz' - annual survey biomass-at-size by x,m,s,z (1000's t)
'B_yxms' - annual survey biomass by x,m,s (1000's t)
'B_yxm' - annual survey biomass by x,m (1000's t)
'B_yx' - annual survey biomass by x (1000's t)
'lglN_y' - legal male annual survey abundance (millions)
'lglB_y' - legal male annual survey biomass (1000's t)
'prNatZ_yxmsz' - annual proportions-at-size by x,m,s
'prNatZ_yxmz' - annual proportions-at-size by x,m
'prNatZ_yxz' - annual proportions-at-size by x
'PRs_yxmsz' - pearsons residuals for annual proportions-at-size by x,m,s
'PRs_yxmz' - pearsons residuals for annual proportions-at-size by x,m
'PRs_yxz' - pearsons residuals for annual proportions-at-size by x
'mnPrNatZ_xmz' - mean proportions-at-size by x,m
'mnPrNatZ_xz' - mean proportions-at-size by x
'qSrv_yxz' - survey catchability, by survey, year and sex
'selSrv_cxz' - survey selectivity, by time period and sex
'selSrv_yxz' - survey selectivity, by survey, year and sex
'zscores' - annual z-scores for fit to mature survey biomass, by sex
'effSS_y' - effective (and input) sample sizes for multinomial fits
Requires sqldf package.
dataframe with columns in canonical format
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.