Files in wStockhausen/rTCSAM2013
Functions to run and plot output from TCSAM2013 models.
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/calcABC.R
R/calcCIs.R
R/compareModelResults.FisheryMeanZCs.R
R/compareModelResults.FisheryPRs.R
R/compareModelResults.FisheryQuantities.R
R/compareModelResults.FisheryRates.R
R/compareModelResults.FisheryRetFcns.R
R/compareModelResults.FisherySelFcns.R
R/compareModelResults.FisheryTCFMaleSelFcns.R
R/compareModelResults.FisheryZCs.R
R/compareModelResults.GrowthMatrices.R
R/compareModelResults.MeanGrowth.R
R/compareModelResults.NatMort.R
R/compareModelResults.ObjFunComponents.R
R/compareModelResults.Params.R
R/compareModelResults.PopProcesses.R
R/compareModelResults.PopQuantities.R
R/compareModelResults.PrM2M.R
R/compareModelResults.SurveyMeanZCs.R
R/compareModelResults.SurveyPRs.R
R/compareModelResults.SurveyQuantities.R
R/compareModelResults.SurveySelFcns.R
R/compareModelResults.SurveyZCs.R
R/convertToListOfResults.R
R/exportModelComparisons.TimeSeries.R
R/extractJitterInfo.R
R/getMDFR.Fisheries.CatchAbundance.R
R/getMDFR.Fisheries.CatchBiomass.R
R/getMDFR.FisheryQuantities.R
R/getMDFR.ObjFunComponents.R
R/getMDFR.ParamsPlusStdDevs.R
R/getMDFR.Pop.Abundance.R
R/getMDFR.Pop.Biomass.R
R/getMDFR.Pop.GrowthMatrices.R
R/getMDFR.Pop.MatureBiomass.R
R/getMDFR.Pop.MeanGrowth.R
R/getMDFR.Pop.NaturalMortality.R
R/getMDFR.Pop.PrM2M.R
R/getMDFR.Pop.Processes.R
R/getMDFR.Pop.Quantities.R
R/getMDFR.Pop.RecSizeDistribution.R
R/getMDFR.Pop.Recruitment.R
R/getMDFR.SurveyQuantities.R
R/getMDFR.Surveys.Abundance.R
R/getMDFR.Surveys.Biomass.R
R/getMDFR.XZ.R
R/getOFC.R
R/getPar.R
R/getPrs.R
R/getRep.R
R/getResLst.R
R/getRunCommands.R
R/getStd.R
R/getSubPaths.R
R/getTimeInfo.R
R/getWTS.R
R/plot2.ModelComparisonsGG.TimeSeries.R
R/plotABC.R
R/plotBubbles.R
R/plotData.Fishery.Discarded.NatZ.R
R/plotData.Fishery.Retained.NatZ.R
R/plotData.R
R/plotData.Survey.NatZ.R
R/plotMeanSizeComps.R
R/plotModelComparisons.TimeSeries.R
R/plotModelComparisonsGG.TimeSeries.R
R/plotModelComparisonsGG.ZScores.R
R/plotMulti.GG.R
R/plotNatMort.R
R/plotQuadPlot.R
R/plotSizeCompsComparisons.R
R/plotTCSAM2013.R
R/plotTCSAM2013I.GG.R
R/plotTCSAM2013I.R
R/plotTCSAM_WTS.R
R/plotTCSAM_WTS.ZScores.R
R/plotZScores.R
R/removeImmOS.R
R/renderReports.R
R/renderRetroReports.R
R/runJitter.R
R/runProfiles.R
R/runSequence.R
R/runTCSAM2013.R
README.md
inst/Rmd/createReport.Figures.Rmd
inst/Rmd/createReport.Tables.Rmd
inst/Rmd/createRetroReport.Figures.Rmd
inst/Rmd/createRetroReport.Tables.Rmd
man/calcABC.Rd
man/calcCIs.Rd
man/compareModelResults.FisheryMeanZCs.Rd
man/compareModelResults.FisheryPRs.Rd
man/compareModelResults.FisheryQuantities.Rd
man/compareModelResults.FisheryRates.Rd
man/compareModelResults.FisheryRetFcns.Rd
man/compareModelResults.FisherySelFcns.Rd
man/compareModelResults.FisheryTCFMaleSelFcns.Rd
man/compareModelResults.FisheryZCs.Rd
man/compareModelResults.GrowthMatrices.Rd
man/compareModelResults.MeanGrowth.Rd
man/compareModelResults.NatMort.Rd
man/compareModelResults.ObjFunComponents.Rd
man/compareModelResults.Params.Rd
man/compareModelResults.PopProcesses.Rd
man/compareModelResults.PopQuantities.Rd
man/compareModelResults.PrM2M.Rd
man/compareModelResults.SurveyMeanZCs.Rd
man/compareModelResults.SurveyPRs.Rd
man/compareModelResults.SurveyQuantities.Rd
man/compareModelResults.SurveySelFcns.Rd
man/compareModelResults.SurveyZCs.Rd
man/convertToListOfResults.Rd
man/exportModelComparisons.TimeSeries.Rd
man/extractJitterInfo.Rd
man/getMDFR.Fisheries.CatchAbundance.Rd
man/getMDFR.Fisheries.CatchBiomass.Rd
man/getMDFR.FisheryQuantities.Rd
man/getMDFR.ObjFunComponents.Rd
man/getMDFR.ParamsPlusStdDevs.Rd
man/getMDFR.Pop.Abundance.Rd
man/getMDFR.Pop.Biomass.Rd
man/getMDFR.Pop.GrowthMatrices.Rd
man/getMDFR.Pop.MatureBiomass.Rd
man/getMDFR.Pop.MeanGrowth.Rd
man/getMDFR.Pop.NaturalMortality.Rd
man/getMDFR.Pop.PrM2M.Rd
man/getMDFR.Pop.Processes.Rd
man/getMDFR.Pop.Quantities.Rd
man/getMDFR.Pop.RecSizeDistribution.Rd
man/getMDFR.Pop.Recruitment.Rd
man/getMDFR.SurveyQuantities.Rd
man/getMDFR.Surveys.Abundance.Rd
man/getMDFR.Surveys.Biomass.Rd
man/getMDFR.XZ.Rd
man/getOFC.Rd
man/getPar.Rd
man/getPrs.Rd
man/getRep.Rd
man/getResLst.Rd
man/getRunCommands.Rd
man/getStd.Rd
man/getSubPaths.Rd
man/getTimeInfo.Rd
man/getWTS.Rd
man/plot2.ModelComparisonsGG.TimeSeries.Rd
man/plotABC.Rd
man/plotBubbles.Rd
man/plotData.Fishery.Discarded.NatZ.Rd
man/plotData.Fishery.Retained.NatZ.Rd
man/plotData.Rd
man/plotData.Survey.NatZ.Rd
man/plotMeanSizeComps.Rd
man/plotModelComparisons.TimeSeries.Rd
man/plotModelComparisonsGG.TimeSeries.Rd
man/plotModelComparisonsGG.ZScores.Rd
man/plotMulti.GG.Rd
man/plotNatMort.Rd
man/plotQuadPlot.Rd
man/plotSizeCompsComparisons.Rd
man/plotTCSAM2013.Rd
man/plotTCSAM2013I.GG.Rd
man/plotTCSAM2013I.Rd
man/plotTCSAM_WTS.Rd
man/plotTCSAM_WTS.ZScores.Rd
man/plotZScores.Rd
man/removeImmOS.Rd
man/renderReports.Rd
man/renderRetroReports.Rd
man/runJitter.Rd
man/runProfiles.Rd
man/runSequence.Rd
man/runTCSAM2013.Rd
names.repObjs.xlsx
rTCSAM2013.Rproj
