runProfiles: Function to run profiles on a TCSAM2013 model.
In wStockhausen/rTCSAM2013: Functions to run and plot output from TCSAM2013 models.

Description Usage Arguments Details Value

This functions runs profiles on a TCSAM2013 model.

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runProfiles(os = "osx", path = ".", model = "tcsam2013alta",
  path2model = "", configFileTemplate = NULL, controlFileTemplate = NULL,
  profiles = NULL, runSeqs = TRUE, numRuns = 4, plotResults = TRUE)

`os`	- 'win' or 'mac' or 'osx'
`path`	- path to parent folder for model output
`model`	- TCSAM2013 model executable name
`path2model`	- path to model executable
`profiles`	- dataframe with variables to profile on in each row
`runSeqs`	- TRUE to run sequences, FALSE to jitter
`numRuns`	- number of sequences or jitters to run
`plotResults`	- T/F to plot final results within each profile using `plotTCSAM2013I`
`configFile`	- path to model configuration file template
`controlFile`	- path to model control file template

This function creates a shell script ('./tmp.sh') in the working directory and uses it to run a version of the TCSAM2013 model. Initial model parameters can be jittered based on the system clock time as a seed to the random number generator. The seed and final objective function value are saved for each model run in a csv file (the value of out.csv).

- par file dataframe

wStockhausen/rTCSAM2013 documentation built on May 3, 2019, 7:13 p.m.