getRunCommands: Generate run commands for a tcsam2013 model run
In wStockhausen/rTCSAM2013: Functions to run and plot output from TCSAM2013 models.

Function to generate a script to make a tcsam2013 model run

getRunCommands(os = "osx", model = "tcsam2013alta", path2model = "",
  configFile = "", pin = FALSE, hess = FALSE, mcmc = FALSE,
  jitter = FALSE, seed = NULL, minPhase = NULL, maxPhase = NULL,
  rmEXE = FALSE, cleanup = TRUE)

`os`	- 'win', 'mac' or 'osx'
`model`	- admb model name
`path2model`	- path to model
`configFile`	- filename (including path) to model configuration file
`pin`	- flag (T/F) to use/not use a default pin file, or an ascii filename to use a non-default one
`hess`	- flag (T/F) to calculate the hessian
`mcmc`	- flag (T/F) to do mcmc calculations
`jitter`	- flag (T/F) to use jitter initial values
`seed`	- value for random number seed to generate jitter
`minPhase`	- min phase to start estimation
`maxPhase`	- max phase for estimation
`rmEXE`	- flag to remove model executable from run folder
`cleanup`	- flag (T/F) to clean up unnecessary files

. If cleanup is TRUE, then the executable, .bar, .b0*, .p0*, .r0*, variance, EchoOut.dat, CheckFile.dat, and fimn.log files are deleted. If not, then only the executable is deleted.
If the path associated with configFile is a relative one, it should be relative to the path variable.

wStockhausen/rTCSAM2013 documentation built on May 3, 2019, 7:13 p.m.