plotCompsAsCircles: Create or add to a circle plot of age or size comp.s.

In wStockhausen/rTCSAM2015: A set of tools to set up input for, and interact with output from, a TCSAM2015 model run, as well as to compare TCSAM2015 and rsimTCSAM runs.

Description

Creates or adds to a circle plot of age or size comp.s.

Usage

plotCompsAsCircles(z = NULL, x = NULL, y = NULL, transform = TRUE,
  overplot = FALSE, maxRadius = 0.5, scale = NULL, fg = c("black",
  "black"), bg = c("green", "blue"), lty = c("solid", "solid"),
  transparency = 0.5, plotCohorts = FALSE, units = "data units",
  main = NA, subtitle = NA, xlims = NULL, ylims = NULL, xaxt = TRUE,
  yaxt = TRUE, xlab = NA, ylab = NA, ...)

Arguments

z	- vector or matrix of values to be plotted as circles
x	- x coordinates of circle centers
y	- y coordinates of circle centers
transform	- flag (T/F) to scale z values to circle area (T) or radius (F)
overplot	- flag (T/F) to plot over an existing plot
maxRadius	- max radius (in data units) to allow
scale	- scale factor to normalize z values by
fg	- vector of colors for circle outlines ("black","grey"),
bg	- vector of colors for circle fills ("blue","green"),
lty	- vector of line types for circle outlines ("solid","dotted") to use
transparency	- alpha level for transparency (0-1)
plotCohorts	flag (T/F) to plot cohorts
units	- label for units
main	- title for plot
subtitle	- subtitle for plot
xlims	- x axis limts
ylims	- y axis limits
xaxt	- x axis text
yaxt	- y axis text
xlab	- x axis label
ylab	- y axis label

Details

if z is a vector, x must be a vector of length(z) if z is a matrix, x can be a matrix of dim(z) or x can be a vector of length ncol(z) if z is a vector, y must be a vector of length(z) if z is a matrix, y can be a matrix of dim(z) or y can be a vector of length nrow(z)

Value

value used to scale the plot

wStockhausen/rTCSAM2015 documentation built on May 3, 2019, 7:14 p.m.