API for welch16/microbiome.onglab
Wrapper functions to run dada2 with htCondor
| Global functions | |
|---|---|
| any_na | Man page Source code |
| aux_get_matrix | Man page Source code |
| aux_split_run | Man page Source code |
| compute_prevalence | Man page Source code |
| condor_error_rates | Man page Source code |
| condor_filter_trim | Man page Source code |
| condor_generate_all | Man page Source code |
| condor_generate_group_dag | Man page Source code |
| condor_label_taxa | Man page Source code |
| condor_make_sequence_table | Man page Source code |
| condor_merge_pairs | Man page Source code |
| condor_remove_chimeras | Man page Source code |
| condor_sourcetracker | Man page Source code |
| create_file_structure | Man page Source code |
| create_file_structure_group | Man page Source code |
| dada2_param_copy_all | Man page Source code |
| dada2_param_filter_trim | Man page Source code |
| dada2_param_learn_error_rates | Man page Source code |
| dada2_param_merge_pairs | Man page Source code |
| dada2_param_remove_chimera | Man page Source code |
| get_param_chimeras | Man page Source code |
| get_param_error_rates | Man page Source code |
| get_param_filter_trim | Man page Source code |
| get_param_merge_pairs | Man page Source code |
| get_param_sourcetracker | Man page Source code |
| get_tax_ids | Man page Source code |
| load_sourcetracker | Man page Source code |
| merge_sourcetracker_results | Man page Source code |
| move_file | Source code |
| parse_filtered_file | Man page Source code |
| plot_abundance_per_step | Man page |
| plot_prevalence | Man page Source code |
| plot_quality_profiles | Man page |
| run_diversity_app | Man page Source code |
| save_files | Man page Source code |
| sourcetracker_parameters | Man page Source code |
| summarize_number_reads | Man page Source code |
| warning_file | Man page Source code |
