condor_make_sequence_table: generate the input to make the sequence table files with...

Description Usage Arguments

View source: R/make_seqtab_functions.R

Description

generate the input to make the sequence table files with condor

Usage

1
2
3
4
5
6
7
8
9
condor_make_sequence_table(
  make_queue_file = "",
  make_prefix = "seqtab",
  make_outdir = ".",
  condor_file = "./condor_make_seqtab",
  batch_name = "dada2_make_seqtab",
  request_cores = 4,
  request_mem = "4 GB"
)

Arguments

make_queue_file

name of the file with the queue, it has 3 columns sample_name | R1.fastq | R2.fastq

make_prefix

prefix name for the sequence table output file

make_outdir

directory where the output is going to be saved

condor_file

name of the file with condor instructions

batch_name

string with the name of the batch

request_cores

number of cpus per machine

request_mem

number of GB required as memory


welch16/microbiome.onglab documentation built on March 12, 2020, 3:08 a.m.