View source: R/make_seqtab_functions.R
generate the input to make the sequence table files with condor
1 2 3 4 5 6 7 8 9 | condor_make_sequence_table(
make_queue_file = "",
make_prefix = "seqtab",
make_outdir = ".",
condor_file = "./condor_make_seqtab",
batch_name = "dada2_make_seqtab",
request_cores = 4,
request_mem = "4 GB"
)
|
make_queue_file |
name of the file with the queue, it has 3 columns sample_name | R1.fastq | R2.fastq |
make_prefix |
prefix name for the sequence table output file |
make_outdir |
directory where the output is going to be saved |
condor_file |
name of the file with condor instructions |
batch_name |
string with the name of the batch |
request_cores |
number of cpus per machine |
request_mem |
number of GB required as memory |
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