condor_generate_group_dag: generate the dagman file for running the pipeline with condor

In welch16/microbiome.onglab: Wrapper functions to run dada2 with htCondor

Description

generate the dagman file for running the pipeline with condor

Usage

condor_generate_group_dag(
  condordir,
  prefix,
  filter_trim_file,
  error_rates_file,
  merge_pairs_file,
  seque_table_file
)

Arguments

condordir	directory where all condor files are going to be saved
prefix	prefix to be used in all files
filter_trim_file	name of the filter and trim condor file
error_rates_file	name of the learning error rates condor file
merge_pairs_file	name of the merge pairs condor file
seque_table_file	name of the make sequence table condor file

welch16/microbiome.onglab documentation built on March 12, 2020, 3:08 a.m.