summarize_number_reads: summarizes the number of reads resulted after each step into...
In welch16/microbiome.onglab: Wrapper functions to run dada2 with htCondor
View source: R/quality_control_diagnostics.R
Description
summarizes the number of reads resulted after each step into one table
Usage
1
summarize_number_reads(reads_file, outprefix, outdir, cores)
Arguments
reads_file,
a 3 column csv file with columns:
sample | R1.fastq | R2.fastq
outprefix
prefix used in the final ASV table
outdir
names of the output directory where the results are saved
cores
number of cpus used to run the process
welch16/microbiome.onglab documentation built on March 12, 2020, 3:08 a.m.
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View source: R/quality_control_diagnostics.R
Description
summarizes the number of reads resulted after each step into one table
Usage
1 | summarize_number_reads(reads_file, outprefix, outdir, cores)
|
Arguments
reads_file, |
a 3 column csv file with columns: sample | R1.fastq | R2.fastq |
outprefix |
prefix used in the final ASV table |
outdir |
names of the output directory where the results are saved |
cores |
number of cpus used to run the process |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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