get_tax_ids: auxiliar function to label the taxa
In welch16/microbiome.onglab: Wrapper functions to run dada2 with htCondor
Description
Usage
Arguments
Value
Description
auxiliar function to label the taxa
Usage
1
get_tax_ids(dna, rdata_file, confidence_thr = 60, cores = NULL)
Arguments
dna
DNAStringSet with the ASV sequences
rdata_file
idtaxa model learned saved as a RData file
confidence_thr
confidence threshold, higher levels
indicates higher accuracy
cores
number of cpus to use
Value
a data.frame with the labelled taxa
welch16/microbiome.onglab documentation built on March 12, 2020, 3:08 a.m.
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Description Usage Arguments Value
Description
auxiliar function to label the taxa
Usage
1 | get_tax_ids(dna, rdata_file, confidence_thr = 60, cores = NULL)
|
Arguments
dna |
|
rdata_file |
idtaxa model learned saved as a RData file |
confidence_thr |
confidence threshold, higher levels indicates higher accuracy |
cores |
number of cpus to use |
Value
a data.frame with the labelled taxa
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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