compute_prevalence: computes the prevalence statistics for each ASV
In welch16/microbiome.onglab: Wrapper functions to run dada2 with htCondor
Description
Usage
Arguments
Value
View source: R/prevalence_functions.R
Description
computes the prevalence statistics for each ASV
Usage
1
compute_prevalence(asv_table, idtaxa)
Arguments
asv_table
matrix with samples as rows and ASVs as columns
idtaxa
matrix with taxa classification for each ASV
Value
a tibble with the prevalence statistics per ASV
welch16/microbiome.onglab documentation built on March 12, 2020, 3:08 a.m.
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Description Usage Arguments Value
View source: R/prevalence_functions.R
Description
computes the prevalence statistics for each ASV
Usage
1 | compute_prevalence(asv_table, idtaxa)
|
Arguments
asv_table |
matrix with samples as rows and ASVs as columns |
idtaxa |
matrix with taxa classification for each ASV |
Value
a tibble with the prevalence statistics per ASV
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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