Man pages for wikiselev/clustools
Tools for cluster analysis of single cell high throughput data
| bernstein | Single cell RNA-Seq data extracted from a publication by... |
| calculate_distance | Calculate a distance matrix |
| check_gene_filter1 | Check the first filtering step. |
| check_kmeans_clustering | Compare kmeans clustering with ground truth clusters |
| cluster_real_data | Cluster real data |
| confusion | Confusion calculation |
| confusion_pipeline | Calclulate and plot confusions |
| filter1_params | Default parameters for the first filtering step |
| gene_filter1 | First filtering step |
| gene_filter2 | Second filtering step |
| kirschner | Single cell RNA-Seq data extracted from a publication by... |
| linnarsson | Single cell RNA-Seq data extracted from a publication by... |
| machine_learning_pipeline | Learning pipeline |
| markov_stability | Find structure of the data (number of clusters) based on... |
| minWeightBipartiteMatching | Match clustering solutions |
| nearest_neighbour_pipeline | Nearest neighbour pipeline |
| norm_laplacian | Laplacian computation |
| pheatmap | A function to draw clustered heatmaps. |
| quake | Single cell RNA-Seq data extracted from a publication by... |
| sandberg | Single cell RNA-Seq data extracted from a publication by... |
| support_vector_machines | Support vector machine (SVM) learning on toy datasets |
| transformation | Dimensionality reduction of a distance matrix |
| zhong | Single cell RNA-Seq data extracted from a publication by... |
