bernstein: Single cell RNA-Seq data extracted from a publication by...

In wikiselev/clustools: Tools for cluster analysis of single cell high throughput data

Description

Source: Patel, A. P. et al. Single-cell RNA-seq highlights intratumoral heterogeneity in primary glioblastoma. Science 344, 1396–1401 (2014).

Usage

bernstein

Format

 num [1:5947, 1:364] -3.89 1.19 -5.82 -2.92 -1.42 ...
 - attr(*, "dimnames")=List of 2
  ..$ : NULL
  ..$ : chr [1:364] "1" "1" "1" "1" ...

Details

http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE57872

Columns represent cells, rows represent genes expression values. Colnames respresent indexes of cell clusters (known information based on the experimental protocol). There are 364 cells and 5 clusters in this dataset.

NOTE: This dataset is already processed with gene_filter1 and log transformation.

wikiselev/clustools documentation built on May 4, 2019, 5:25 a.m.