sandberg: Single cell RNA-Seq data extracted from a publication by...

In wikiselev/clustools: Tools for cluster analysis of single cell high throughput data

Description

Source: Deng, Q., Ramsköld, D., Reinius, B. & Sandberg, R. Single-cell RNA-seq reveals dynamic, random monoallelic gene expression in mammalian cells. Science 343, 193–196 (2014).

Usage

sandberg

Format

 num [1:22957, 1:201] 0 151.61 0.0283 100.04 0 ...
 - attr(*, "dimnames")=List of 2
  ..$ : NULL
  ..$ : chr [1:201] "1" "1" "1" "1" ...

Details

http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE45719

Columns represent cells, rows represent genes expression values. Colnames respresent indexes of cell clusters (known information based on the experimental protocol). There are 201 cells and 9 clusters in this dataset.

wikiselev/clustools documentation built on May 4, 2019, 5:25 a.m.