linnarsson: Single cell RNA-Seq data extracted from a publication by...

In wikiselev/clustools: Tools for cluster analysis of single cell high throughput data

Description

Source: Zeisel, A. et al. Brain structure. Cell types in the mouse cortex and hippocampus revealed by single-cell RNA-seq. Science 347, 1138–1142 (2015).

Usage

linnarsson

Format

 int [1:19972, 1:3005] 0 3 3 0 1 0 0 11 1 0 ...
 - attr(*, "dimnames")=List of 2
  ..$ : chr [1:19972] "Tspan12" "Tshz1" "Fnbp1l" "Adamts15" ...
  ..$ : chr [1:3005] "1" "1" "1" "1" ...

Details

http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE60361

Columns represent cells, rows represent genes expression values. Colnames respresent indexes of cell clusters (known information based on the experimental protocol). There are 3005 cells and 9 clusters in this dataset.

wikiselev/clustools documentation built on May 4, 2019, 5:25 a.m.