quake: Single cell RNA-Seq data extracted from a publication by...

In wikiselev/clustools: Tools for cluster analysis of single cell high throughput data

Description

Source: Treutlein, B. et al. Reconstructing lineage hierarchies of the distal lung epithelium using single-cell RNA-seq. Nature 509, 371–375 (2014).

Usage

quake

Format

 num [1:23270, 1:50] 5.35 34.88 225.31 7.73 56.4 ...
 - attr(*, "dimnames")=List of 2
  ..$ : NULL
  ..$ : chr [1:50] "4" "2" "4" "2" ...

Details

http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE52583

Columns represent cells, rows represent genes expression values. Colnames respresent indexes of cell clusters (known information based on the experimental protocol). There are 50 cells and 5 clusters in this dataset.

wikiselev/clustools documentation built on May 4, 2019, 5:25 a.m.