kirschner: Single cell RNA-Seq data extracted from a publication by...

In wikiselev/clustools: Tools for cluster analysis of single cell high throughput data

Description

Source: Klein, A. M. et al. Droplet Barcoding for Single-Cell Transcriptomics Applied to Embryonic Stem Cells. Cell 161, 1187–1201 (2015).

Usage

kirschner

Format

 int [1:24175, 1:2717] 0 1 0 1 4 0 3 4 2 2 ...
 - attr(*, "dimnames")=List of 2
  ..$ : chr [1:24175] "0610005C13Rik" "0610007P14Rik" "0610009B22Rik" "0610009L18Rik" ...
  ..$ : chr [1:2717] "1" "1" "1" "1" ...

Details

http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE65525

Columns represent cells, rows represent genes expression values. Colnames respresent indexes of cell clusters (known information based on the experimental protocol). There are 2717 cells and 3 clusters in this dataset.

wikiselev/clustools documentation built on May 4, 2019, 5:25 a.m.