Description Usage Arguments Value Examples
Filter genes that would not contribute to clustering, because they are either expreseed or not expressed in almost all cells.
1 | gene_filter1(d, min.cells, max.cells, min.reads)
|
d |
Expression matrix with rows as genes and columns as cells |
min.cells |
Minimum number of cells in which a given gene is expressed |
max.cells |
Maximum number of cells in which a given gene is expressed |
min.reads |
Minimum number of reads per gene per cell |
Filtered expression matrix in which only genes that are expressed in
more than min.cells
with more than min.reads
reads and also are
expressed in less than [total number of cells - max.cells
].
1 | gene_filter1(quake, 3, 3, 2)
|
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