contrasts_fisher_exact: Fishers exact test on a datframe

In wolski/prolfqua: Proteomics Label Free Quantification

Fishers exact test on a datframe

Description

Fishers exact test on a datframe

Usage

contrasts_fisher_exact(
  xb,
  observedA = "observedA",
  observedB = "observedB",
  samplesA = "samplesA",
  samplesB = "samplesB"
)

See Also

Other modelling: Contrasts, ContrastsMissing, ContrastsModerated, ContrastsPlotter, ContrastsProDA, ContrastsROPECA, ContrastsTable, INTERNAL_FUNCTIONS_BY_FAMILY, LR_test(), Model, build_model(), get_anova_df(), get_complete_model_fit(), get_imputed_contrasts(), get_p_values_pbeta(), isSingular_lm(), linfct_all_possible_contrasts(), linfct_factors_contrasts(), linfct_from_model(), linfct_matrix_contrasts(), merge_contrasts_results(), model_analyse(), model_summary(), moderated_p_limma(), moderated_p_limma_long(), my_contest(), my_contrast(), my_contrast_V1(), my_contrast_V2(), my_glht(), pivot_model_contrasts_2_Wide(), plot_lmer_model_and_data(), plot_lmer_peptide_noRandom(), plot_lmer_peptide_predictions(), plot_lmer_predicted_interactions(), strategy_lmer(), summary_ROPECA_median_p.scaled()

Examples

Nprot <- 1000
condA <- 8
condB <- 8
observedA <- sample(0:8, Nprot, replace = TRUE)
observedB <- sample(0:8, Nprot, replace = TRUE)
xb <- data.frame(observedA = observedA, observedB = observedB)

xb$samplesA <- condA
xb$samplesB <- condB
proteinID <- unique(stringi::stri_rand_strings(Nprot + 20,5))[1:Nprot]
xb$proteinID <- proteinID
xlater <- xb
res <- contrasts_fisher_exact(xlater)

wolski/prolfqua documentation built on April 27, 2024, 4:09 p.m.