cor_jackknife_matrix: Compute correlation matrix with jackknife resampling

In wolski/prolfqua: Proteomics Label Free Quantification

Compute correlation matrix with jackknife resampling

Description

Compute correlation matrix with jackknife resampling

Usage

cor_jackknife_matrix(
  dataX,
  distmethod = function(x) {
     cor(x, use = "pairwise.complete.obs", method =
    "pearson")
 }
)

Arguments

dataX

data.frame with e.g. transition intensities per peptide or pepitde intensities per protein

See Also

Other transitioncorrlation: cor_order(), jackknife(), jackknife_matrix()

Examples

dd <- prolfqua_data("data_correlatedPeptideList")

class(dd[[1]])
dd[[1]][1,2] <- NA
cor_jackknife_matrix(dd[[1]])

wolski/prolfqua documentation built on Dec. 4, 2024, 11:18 p.m.