contrasts_linfct: compute group averages
In wolski/prolfqua: Proteomics Label Free Quantification

contrasts_linfct

R Documentation

compute group averages

Description

used in p2621, p2109

Usage

contrasts_linfct(
  models,
  linfct,
  subject_Id = "protein_Id",
  contrastfun = prolfqua::my_contest
)

Examples

data("data_modellingResult_A")
modelSummary_A <- data_modellingResult_A
m <- get_complete_model_fit(modelSummary_A$modelProtein)

factor_contrasts <- linfct_factors_contrasts( m$linear_model[[1]])
factor_contrasts
class(factor_contrasts)
factor_levelContrasts <- contrasts_linfct( m,
        factor_contrasts,
        subject_Id = "Compound",
        contrastfun = prolfqua::my_contrast_V2)

#usethis::use_data(factor_levelContrasts, overwrite = TRUE)

wolski/prolfqua documentation built on April 27, 2024, 4:09 p.m.