promoterVariantToString: make DNAStrings of sequences for each gene of each accession
In wrightrc/r1001genomes: Access and analyze the 1001 genomes Arabidopsis resequencing dataset
Description
make DNAStrings of sequences for each gene of each accession
Usage
1
promoterVariantToString(SNPs, genome, ranges, files_out = TRUE)
Arguments
SNPs
a VRanges object containing the SNPs you would like to make
sequences for
genome
a BSgenomes object corresponding to the genome used to call
the SNPs and also corresponding to the ranges set in 'ranges'
ranges
a named GRanges object containing the ranges of the sequence
elements you would like to extract
wrightrc/r1001genomes documentation built on Nov. 10, 2019, 12:45 p.m.
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Description
make DNAStrings of sequences for each gene of each accession
Usage
1 | promoterVariantToString(SNPs, genome, ranges, files_out = TRUE)
|
Arguments
SNPs |
a VRanges object containing the SNPs you would like to make sequences for |
genome |
a BSgenomes object corresponding to the genome used to call the SNPs and also corresponding to the ranges set in 'ranges' |
ranges |
a named GRanges object containing the ranges of the sequence elements you would like to extract |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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