makeAlnDF: Make an alignment data frame for plotting
In wrightrc/r1001genomes: Access and analyze the 1001 genomes Arabidopsis resequencing dataset
Description
Usage
Arguments
Value
Examples
Description
Make an alignment data frame for plotting
Usage
1
makeAlnDF(alignment)
Arguments
alignment
an AAStringSet or DNAStringSet resulting from an alignment made with DECIPHER.
Value
a tidy long data frame of the alignment with columns 'seq_name', 'letter', 'aln_pos', and 'seq_pos', where 'aln_pos' is the position of the letter in the alignment of all sequences and 'seq_pos' is the position of the letter in the native sequence.
Examples
1
2
3
wrightrc/r1001genomes documentation built on Nov. 10, 2019, 12:45 p.m.
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Description Usage Arguments Value Examples
Description
Make an alignment data frame for plotting
Usage
1 | makeAlnDF(alignment)
|
Arguments
alignment |
an AAStringSet or DNAStringSet resulting from an alignment made with DECIPHER. |
Value
a tidy long data frame of the alignment with columns 'seq_name', 'letter', 'aln_pos', and 'seq_pos', where 'aln_pos' is the position of the letter in the alignment of all sequences and 'seq_pos' is the position of the letter in the native sequence.
Examples
1 2 3 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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