geneInfoFromGff: get gene information from .gff file
In wrightrc/r1001genomes: Access and analyze the 1001 genomes Arabidopsis resequencing dataset
Description
Usage
Arguments
Value
Examples
Description
get gene information from .gff file
Usage
1
geneInfoFromGff(genes, gffFile)
Arguments
genes
a character vector of tair IDs of the genes to retrieve
gffFile
file path to the gff file or gz compressed gff file.
Value
gene info in same format as getGeneInfo, but including all transcripts.
Examples
1
2
3
4
gffFile <- system.file("extdata",
"Araport11_GFF3_genes_transposons.201606.gff.gz",
package="r1001genomes")
geneInfo <- geneInfoFromGff(genes = c("AT3G62980", "AT3G26810"), gffFile)
wrightrc/r1001genomes documentation built on Nov. 10, 2019, 12:45 p.m.
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Description Usage Arguments Value Examples
Description
get gene information from .gff file
Usage
1 | geneInfoFromGff(genes, gffFile)
|
Arguments
genes |
a character vector of tair IDs of the genes to retrieve |
gffFile |
file path to the gff file or gz compressed gff file. |
Value
gene info in same format as getGeneInfo, but including all transcripts.
Examples
1 2 3 4 | gffFile <- system.file("extdata",
"Araport11_GFF3_genes_transposons.201606.gff.gz",
package="r1001genomes")
geneInfo <- geneInfoFromGff(genes = c("AT3G62980", "AT3G26810"), gffFile)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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