makeChunksDF: Create a chunks data frame from a chunked alignment data...
In wrightrc/r1001genomes: Access and analyze the 1001 genomes Arabidopsis resequencing dataset
Description
Usage
Arguments
Value
Examples
Description
To allow similar chunking of annotation layers for facetting
across multiple rows
Usage
1
makeChunksDF(aln_df)
Arguments
aln_df
An alignment dataframe
chunk_width
number of units (bases or amino acids) in a single chunk
Value
a chunks data frame containing the start, end, and chunk name for
each chunk of the alignment
Examples
1
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# make an alignment
IDs <- c("AT3G62980.1", "AT3G26810.1")
alignment <- alignCDS(IDs)
# make an alignment data frame
aln_df <- makeAlnDF(alignment[[2]])
aln_df <- chunkAlnDF(aln_df)
makeChunksDF(aln_df)
wrightrc/r1001genomes documentation built on Nov. 10, 2019, 12:45 p.m.
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Description Usage Arguments Value Examples
Description
To allow similar chunking of annotation layers for facetting across multiple rows
Usage
1 | makeChunksDF(aln_df)
|
Arguments
aln_df |
An alignment dataframe |
chunk_width |
number of units (bases or amino acids) in a single chunk |
Value
a chunks data frame containing the start, end, and chunk name for each chunk of the alignment
Examples
1 2 3 4 5 6 7 | # make an alignment
IDs <- c("AT3G62980.1", "AT3G26810.1")
alignment <- alignCDS(IDs)
# make an alignment data frame
aln_df <- makeAlnDF(alignment[[2]])
aln_df <- chunkAlnDF(aln_df)
makeChunksDF(aln_df)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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