alignCDS: Make an alignment of Coding sequences
In wrightrc/r1001genomes: Access and analyze the 1001 genomes Arabidopsis resequencing dataset

Make an alignment of Coding sequences

1	alignCDS(IDs, primary_only = TRUE, all = FALSE, verbose = FALSE)

`IDs`	a vector of TAIR transcript IDs, e.g. "AT3G26890.1"
`primary_only`	TRUE or FALSE should only the primary transcript coding sequences be aligned?
`all`	TRUE or FALSE, should the coding sequences of all known transcripts be aligned?
`verbose`	TRUE or FALSE, should progress be displayed in the console?

aligned CDS and amino acid sequences as a list of XStringSet objects

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IDs <- c("AT3G62980.1", "AT3G26810.1")
alignment <- alignCDS(IDs)
alignment[[2]]

wrightrc/r1001genomes documentation built on Nov. 10, 2019, 12:45 p.m.

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