geneInfoFromFile: make geneInfo dataframe based on .csv file of tair loci and...
In wrightrc/r1001genomes: Access and analyze the 1001 genomes Arabidopsis resequencing dataset
Description
Usage
Arguments
Value
Examples
Description
make geneInfo dataframe based on .csv file of tair loci and names/symbols
Usage
1
2
geneInfoFromFile(fname, firstOnly = TRUE, useCache = TRUE,
source = "tair10")
Arguments
fname
filename of csv files containing "tair_locus" and "name" fields
firstOnly
logical, if true only return transcript IDs containing ".1"
useCache
logical, read from and write to a file of cached genes?
Value
geneInfo dataframe see getGeneInfo
Examples
1
2
geneIdFile <- system.file("extdata", "AFB_gene_ids.csv", package="r1001genomes")
geneInfoFromFile(fname = geneIdFile)
wrightrc/r1001genomes documentation built on Nov. 10, 2019, 12:45 p.m.
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Description Usage Arguments Value Examples
Description
make geneInfo dataframe based on .csv file of tair loci and names/symbols
Usage
1 2 | geneInfoFromFile(fname, firstOnly = TRUE, useCache = TRUE,
source = "tair10")
|
Arguments
fname |
filename of csv files containing "tair_locus" and "name" fields |
firstOnly |
logical, if true only return transcript IDs containing ".1" |
useCache |
logical, read from and write to a file of cached genes? |
Value
geneInfo dataframe see getGeneInfo
Examples
1 2 | geneIdFile <- system.file("extdata", "AFB_gene_ids.csv", package="r1001genomes")
geneInfoFromFile(fname = geneIdFile)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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