PerformMetaEffectSize: Perform differential abundance analysis on individual dataset...
In xia-lab/MicrobiomeAnalystR: MicrobiomeAnalystR - A comprehensive R package for statistical, visual, and functional analysis of the microbiome.
PerformMetaEffectSize R Documentation
Perform differential abundance analysis on individual dataset and apply combine effect size meta-analysis method on the results
Description
Perform differential abundance analysis on individual dataset and apply combine effect size meta-analysis method on the results
Usage
PerformMetaEffectSize(
mbSetObj = NA,
imgName = "",
taxrank = "OTU",
selMeta,
BHth = 0.05,
de.method = "LM",
ef.method = "REML",
format = "png",
dpi = 72
)
Arguments
imgName
File name of output bar plot image
selMeta
selected metadata
BHth
P-value threshold
de.method
Differential abundance method
ef.method
Effect size model
format
file format of output image
dpi
dots per inch resolution of image (default 72)
method
Method used, either "rem" or "fem"
taxRank
selected taxa rank which to perform analysis
Author(s)
Jeff Xia jeff.xia@mcgill.ca
McGill University, Canada
License: GNU GPL (>= 2)
xia-lab/MicrobiomeAnalystR documentation built on April 17, 2024, 7:45 p.m.
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| PerformMetaEffectSize | R Documentation |
Perform differential abundance analysis on individual dataset and apply combine effect size meta-analysis method on the results
Description
Perform differential abundance analysis on individual dataset and apply combine effect size meta-analysis method on the results
Usage
PerformMetaEffectSize(
mbSetObj = NA,
imgName = "",
taxrank = "OTU",
selMeta,
BHth = 0.05,
de.method = "LM",
ef.method = "REML",
format = "png",
dpi = 72
)
Arguments
imgName |
File name of output bar plot image |
selMeta |
selected metadata |
BHth |
P-value threshold |
de.method |
Differential abundance method |
ef.method |
Effect size model |
format |
file format of output image |
dpi |
dots per inch resolution of image (default 72) |
method |
Method used, either "rem" or "fem" |
taxRank |
selected taxa rank which to perform analysis |
Author(s)
Jeff Xia jeff.xia@mcgill.ca McGill University, Canada License: GNU GPL (>= 2)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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