PerformPartialCorr: Perform Partial Correlation Analysis

In xia-lab/MicrobiomeAnalystR: MicrobiomeAnalystR - A comprehensive R package for statistical, visual, and functional analysis of the microbiome.

Perform Partial Correlation Analysis

Description

Function to perform and plot partial correlations between all taxonomic features, the outcome, and selected confounders. NOTE: All metadata must be numeric

Usage

PerformPartialCorr(
  mbSetObj,
  taxa.lvl = "Phylum",
  variable = NA,
  alg = "pearson",
  pval.cutoff = 0.05
)

Arguments

mbSetObj	Input the name of the mbSetObj.
taxa.lvl	Character, input the taxonomic level to perform partial correlation analysis.
variable	Character, input the selected variable.
alg	Use "kendall" or "spearman" for non-parametric and "pearson" for parametric.

xia-lab/MicrobiomeAnalystR documentation built on April 17, 2024, 7:45 p.m.