PerformRarefaction: Utility function to perform rarefraction (used by...
In xia-lab/MicrobiomeAnalystR: MicrobiomeAnalystR - A comprehensive R package for statistical, visual, and functional analysis of the microbiome.
PerformRarefaction R Documentation
Utility function to perform rarefraction (used by PerformNormalization)
Description
This function performs rarefraction on the uploaded
data.
Usage
PerformRarefaction(mbSetObj, data, rare.opt)
Arguments
mbSetObj
Input the name of the mbSetObj.
data
Input the data.
rare.opt
Input the option for rarefying the microbiome data.
"rarewi" to rarefy with replacement to the minimum library depth and
"rarewo" to rarefy without replacemet to the minimum library depth.
Author(s)
Jeff Xia jeff.xia@mcgill.ca
McGill University, Canada
License: GNU GPL (>= 2)
xia-lab/MicrobiomeAnalystR documentation built on April 17, 2024, 7:45 p.m.
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| PerformRarefaction | R Documentation |
Utility function to perform rarefraction (used by PerformNormalization)
Description
This function performs rarefraction on the uploaded data.
Usage
PerformRarefaction(mbSetObj, data, rare.opt)
Arguments
mbSetObj |
Input the name of the mbSetObj. |
data |
Input the data. |
rare.opt |
Input the option for rarefying the microbiome data. "rarewi" to rarefy with replacement to the minimum library depth and "rarewo" to rarefy without replacemet to the minimum library depth. |
Author(s)
Jeff Xia jeff.xia@mcgill.ca McGill University, Canada License: GNU GPL (>= 2)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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