PlotAlphaBoxData | R Documentation |
This functions performs metagenome seq analysis on the microbiome data.
PlotAlphaBoxData(
mbSetObj,
boxplotName,
distName,
metadata,
colors = "default",
format = "png",
dpi = 72
)
mbSetObj |
Input the name of the mbSetObj. |
boxplotName |
Character, input the name of the boxplot. |
distName |
Character, input the diversity measure to calculate alpha-diversity. "Chao1", "Observed", "ACE", "Shannon", "Simpson", or "Fisher". |
metadata |
Input the name of the experimental factor to group the samples. |
colors |
Use "default", "viridis" to use the viridis color palette, "plasma" to use the plasma color palette, "magma" to use the magma color palette, or "magma" to use the magma color palette. |
format |
Character, input the preferred format of the plot. By default it is set to "png". |
dpi |
Numeric, input the dots per inch. By default it is set to 72. |
Jeff Xia jeff.xia@mcgill.ca McGill University, Canada License: GNU GPL (>= 2)
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