PlotBetaSummary: Perform beta diversity meta-analysis

In xia-lab/MicrobiomeAnalystR: MicrobiomeAnalystR - A comprehensive R package for statistical, visual, and functional analysis of the microbiome.

Perform beta diversity meta-analysis

Description

Compute beta diversity indices of datasets and plot summary figure, adapted from work of Jordan Bisanz

Usage

PlotBetaSummary(
  mbSetObj,
  plotNm,
  taxalvl,
  sel.meta,
  alg,
  format = "png",
  dpi = 72
)

Arguments

mbSetObj	Input the name of the mbSetObj.
plotNm	File name of output summary image
taxalvl	Selected taxonomy rank
sel.meta	Selected metadata
alg	statistical comparison algorithm to detect significant different between metadata groups
format	File format of output image (default to png)
dpi	dots per inch resolution of image (default 72)

Author(s)

Jeff Xia [e-mail] McGill University, Canada License: GNU GPL (>= 2)

xia-lab/MicrobiomeAnalystR documentation built on April 17, 2024, 7:45 p.m.